Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11017103 chr10:131935190 C/A 1.11E-16 173 25.47 27.22 3.17 KM Plot
PCPG rs11017104 chr10:131938395 C/T 0.000115 178 15.22 25.33 25.28 KM Plot
PCPG rs11017107 chr10:131949426 G/A 0 177 25.47 24.47 3.17 KM Plot
PCPG rs11017108 chr10:131953054 G/A 0 178 25.53 24.47 3.17 KM Plot
PCPG rs11017109 chr10:131954597 G/A 0 178 25.53 24.47 3.17 KM Plot
PCPG rs11017111 chr10:131961570 C/T 0 178 25.53 24.47 3.17 KM Plot
PCPG rs11017112 chr10:131962929 G/C 0 178 25.53 24.47 3.17 KM Plot
PCPG rs11017114 chr10:131963652 T/C 0 176 25.47 24.7 3.17 KM Plot
PCPG rs11017118 chr10:131979574 G/A 0 178 25.6 24.23 3.17 KM Plot
PCPG rs11017119 chr10:131979825 T/C 0 178 25.6 24.23 3.17 KM Plot
PCPG rs11017121 chr10:131981333 C/G 0 178 3.17 24.47 25.53 KM Plot
PCPG rs11021869 chr11:2261795 C/T 0.000144 176 25 25.67 85.88 KM Plot
PCPG rs1102191 chr5:179416210 C/T 0.000243 176 24.1 34.73 14.83 KM Plot
PCPG rs11048671 chr12:26884169 C/G 9.42E-5 177 24.3 27.87 5.97 KM Plot
PCPG rs11054971 chr12:7788160 A/C 3.89E-11 178 25.67 22.63 5.8 KM Plot